Step-by-step tutorials, in the spirit of MNE's: each pipeline stage is shown with the figure it produces, on one shared example subject.
01From DICOM to sources: the complete pipelineThe nominal run: a DICOM MRI and an EEG go in, a cortical source estimate comes out. We visualise every stage on the
sample example subject.02EEG already preprocessedYour EEG is already filtered and referenced (e.g. from your own pipeline or from MNE)? You must stop the pipeline from doing it again.03Events in an external fileYour triggers are not in the EEG but in a separate file (e.g. an MNE -eve.fif, or an array you build). Here is how to pass them.04Start from a T1, without DICOMYou already have a T1 as NIfTI (de-identified, or from another tool) and not the original DICOM. The pipeline starts straight from that image.05Volumetric route (BEM / FreeSurfer): the complete pipelineThe alternative to the cortical route: FreeSurfer (via WSL) → three-layer BEM → volumetric source space → a source estimate throughout the brain volume. Same inputs, a different head model.